Update

Author	Message
Kevin Project developer Project tester Project scientist Send message Joined: 4 Feb 12 Posts: 103 Credit: 1,003,053 RAC: 640	Message 30 - Posted: 23 Jul 2012, 17:45:22 UTC Last modified: 23 Jul 2012, 22:33:21 UTC
	Hi everyone, We have a few updates: 1. We have regenerated our signing keys but due to a technical problem they will not be distributed automatically. Please detach and reattach to the project in order to receive new workunits. We apologise for the inconvenience and will ensure that it does not happen again. 2. We are having issues with a small percentage (less than 1%) of Windows computers and a very small percentage of Linux computers. We are working to release new app versions in order to address these problems. 3. We have limited the number of tasks in progress per computer to 20 per CPU core. Although this has not been an issue for some, we have had a large number of aborted tasks as a result of sending too much work to each node. Thanks for your your help. Kevin
	ID: 30 · Rating: 0 · rate: / Reply Quote

frankhagen Send message Joined: 15 Jul 12 Posts: 38 Credit: 39,061 RAC: 229	Message 31 - Posted: 23 Jul 2012, 18:52:13 UTC - in response to Message 30.
	Hi everyone, We have a few updates: Thanks for your help. Kevin well, thanks! and thanks - no! unless you get rid of creditnew which is defintely not a suitable setup for your type of WU-mix, i'm out. greets, frank.
	ID: 31 · Rating: 0 · rate: / Reply Quote

Kevin Project developer Project tester Project scientist Send message Joined: 4 Feb 12 Posts: 103 Credit: 1,003,053 RAC: 640	Message 32 - Posted: 23 Jul 2012, 19:28:51 UTC
	We intend to do this very soon. Regards, Kevin
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Pwrguru [TeaM] Send message Joined: 18 Jul 12 Posts: 3 Credit: 1,119,881 RAC: 0	Message 33 - Posted: 23 Jul 2012, 20:37:12 UTC
	With a run time of under 8 minutes, 20 work units per core isn't even 3 hours worth of work....At least give us half a days worth of work......
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ritterm Send message Joined: 18 Jul 12 Posts: 8 Credit: 138,526 RAC: 58	Message 34 - Posted: 23 Jul 2012, 20:56:01 UTC - in response to Message 33. Last modified: 23 Jul 2012, 20:57:24 UTC
	With a run time of under 8 minutes, 20 work units per core isn't even 3 hours worth of work... Those sound like the v1.07 app. The v2.00 tasks are running a lot longer on my hosts. ____________
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ritterm Send message Joined: 18 Jul 12 Posts: 8 Credit: 138,526 RAC: 58	Message 35 - Posted: 23 Jul 2012, 23:15:54 UTC - in response to Message 34.
	The v2.00 tasks are running a lot longer on my hosts. Well, of course, not all of them are long... (e.g., 151161) ____________
	ID: 35 · Rating: 0 · rate: / Reply Quote

Conan Send message Joined: 20 Jul 12 Posts: 15 Credit: 100,553 RAC: 0	Message 36 - Posted: 24 Jul 2012, 4:30:43 UTC
	Yes, I am getting from 500 seconds to over 8,000 second work units. The longest ones are on my 32 bit Windows machines, so far not as long on the Linux computers. Conan
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ChertseyAl Send message Joined: 12 Jul 12 Posts: 18 Credit: 57,443 RAC: 0	Message 38 - Posted: 24 Jul 2012, 12:01:44 UTC - in response to Message 30.
	We are having issues with a small percentage (less than 1%) of Windows computers Yes, I still have the same problem that I had with V1.07 ... http://boinc.ucd.ie/fmah/result.php?resultid=163738 <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> - exit code -148 (0xffffff6c) </message> <stderr_txt> wrapper: starting 12:04:29 (3000): wrapper: running ../../projects/boinc.ucd.ie_fmah/vina_2.0_windows_intelx86.exe (--config conf --receptor receptor.pdb --ligand ligand.pdb --out outfile --exhaustiveness 20 --cpu 1) can't run app: This application has failed to start because the application configuration is incorrect. Reinstalling the application may fix this problem. (0x36b1) 12:04:29 (3000): called boinc_finish </stderr_txt> ]]> I grabbed a section of the messages tab - There's loads of this: 24/07/2012 12:03:36\|fightmalaria@home\|Starting vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 24/07/2012 12:03:36\|fightmalaria@home\|Starting task vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200 24/07/2012 12:03:36\|fightmalaria@home\|Starting vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 24/07/2012 12:03:36\|fightmalaria@home\|Starting task vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 using vina version 200 24/07/2012 12:03:44\|fightmalaria@home\|[error] Can't rename output file vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 24/07/2012 12:03:49\|fightmalaria@home\|[error] Can't rename output file vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0_0 24/07/2012 12:03:49\|fightmalaria@home\|Computation for task vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished 24/07/2012 12:03:49\|fightmalaria@home\|Output file vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063354.179880-38-1ZRO_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent 24/07/2012 12:03:49\|fightmalaria@home\|Computation for task vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 finished 24/07/2012 12:03:49\|fightmalaria@home\|Output file vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0_0 for task vina_6230_1343063340.234497-74-1Z6B_A.pdbqt-121-1ONF_lig_2.pdbqt-A1-_0 absent 24/07/2012 12:03:49\|fightmalaria@home\|Starting vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 24/07/2012 12:03:49\|fightmalaria@home\|Starting task vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200 24/07/2012 12:03:49\|fightmalaria@home\|Starting vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 24/07/2012 12:03:49\|fightmalaria@home\|Starting task vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200 24/07/2012 12:03:57\|fightmalaria@home\|[error] Can't rename output file vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 24/07/2012 12:04:02\|fightmalaria@home\|[error] Can't rename output file vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 24/07/2012 12:04:02\|fightmalaria@home\|Computation for task vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished 24/07/2012 12:04:02\|fightmalaria@home\|Output file vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063350.564181-11-1D5C_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent 24/07/2012 12:04:02\|fightmalaria@home\|Computation for task vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished 24/07/2012 12:04:02\|fightmalaria@home\|Output file vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063350.070149-9-2QU8_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent 24/07/2012 12:04:02\|fightmalaria@home\|Starting vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 24/07/2012 12:04:02\|fightmalaria@home\|Starting task vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200 24/07/2012 12:04:02\|fightmalaria@home\|Starting vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 24/07/2012 12:04:03\|fightmalaria@home\|Starting task vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 using vina version 200 24/07/2012 12:04:11\|fightmalaria@home\|[error] Can't rename output file vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 24/07/2012 12:04:17\|fightmalaria@home\|[error] Can't rename output file vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 24/07/2012 12:04:17\|fightmalaria@home\|Computation for task vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished 24/07/2012 12:04:17\|fightmalaria@home\|Output file vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063351.182768-14-1OB3_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent 24/07/2012 12:04:17\|fightmalaria@home\|Computation for task vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 finished 24/07/2012 12:04:17\|fightmalaria@home\|Output file vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0_0 for task vina_6230_1343063351.283264-15-1NHG_A.pdbqt-122-3BPW_lig_1.pdbqt-A1-_0 absent So far only one machine affected (same as one of the 2 before), but I suspect the other one will also fail in the same way. Working OK on my other machines though. Cheers, Al.
	ID: 38 · Rating: 0 · rate: / Reply Quote

Kevin Project developer Project tester Project scientist Send message Joined: 4 Feb 12 Posts: 103 Credit: 1,003,053 RAC: 640	Message 42 - Posted: 24 Jul 2012, 20:18:26 UTC
	Thanks for that. We will be working to fix these issues over the next few days. Cheers, Kevin
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bonnjer Send message Joined: 24 Jul 12 Posts: 1 Credit: 53,006 RAC: 0	Message 44 - Posted: 24 Jul 2012, 22:12:46 UTC
	I was just able to download a few WUs and got through them in about 3 minutes each. Will all of them be like that?
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Conan Send message Joined: 20 Jul 12 Posts: 15 Credit: 100,553 RAC: 0	Message 45 - Posted: 25 Jul 2012, 1:33:57 UTC - in response to Message 44.
	I was just able to download a few WUs and got through them in about 3 minutes each. Will all of them be like that? Short answer is 'No'. The tasks have varying run times and some will run up to maybe an hour or more. Most are much shorter. Conan
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Ant Chubb Project scientist Send message Joined: 18 Jul 12 Posts: 53 Credit: 1,015,537 RAC: 0	Message 46 - Posted: 25 Jul 2012, 10:10:14 UTC - in response to Message 44. Last modified: 25 Jul 2012, 11:06:48 UTC
	The run time varies depending on the number of rotatable bonds in the ligand, and the size of the receptor. Large ligands into a large receptor will take significantly more time than a small ligand into a small receptor. The average is about 10 minutes per run. ciao Ant
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ChertseyAl Send message Joined: 12 Jul 12 Posts: 18 Credit: 57,443 RAC: 0	Message 48 - Posted: 25 Jul 2012, 12:05:20 UTC - in response to Message 44.
	I was just able to download a few WUs and got through them in about 3 minutes each. Will all of them be like that? FWIW, I've seen a range of times from a few minutes to 5 hours :) Cheers, Al.
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