Some error's on new work units.
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Message boards : Number crunching : Some error's on new work units.

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P . P . L .
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Message 2326 - Posted: 13 May 2015, 11:39:51 UTC

Hi.
I had a few compute errors.

<core_client_version>7.2.42</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>

Receptor name: PFL0525w_1

Ligand name: CHEMBL316647_0


Parse error on line 20 in file "ligand": ATOM syntax incorrect: "Pt" is not a valid AutoDock type. Note that AutoDock atom types are case-sensitive.
20:48:55 (13024): called boinc_finish(1)

</stderr_txt>
]]>
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Message 2330 - Posted: 13 May 2015, 11:57:06 UTC - in response to Message 2326.

It's not your fault. Some faulty ligand went through the workflow.

JugNut
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Message 2367 - Posted: 16 May 2015, 11:47:14 UTC

Hi Ben,
I thought i'd let you know I just got a small pile of comp errors over the past few hours with 18 of them over the day. Some are just unknown ligands types("Pt")
i'm not sure what to make of the majority of them. They show as unhandled exceptions & give an error status: 197 (0xc5) EXIT_TIME_LIMIT_EXCEEDED.
The error message in the Stderr output is "exceeded elapsed time limit 9.28 (80.00G/8.62G)"

Unhandled exceptions
http://findah.ucd.ie/result.php?resultid=29671795
http://findah.ucd.ie/result.php?resultid=29664647
http://findah.ucd.ie/result.php?resultid=29651538
http://findah.ucd.ie/result.php?resultid=29651540
http://findah.ucd.ie/result.php?resultid=29651542
http://findah.ucd.ie/result.php?resultid=29651544

Unknow Ligands...
http://findah.ucd.ie/result.php?resultid=29667726

Plus more like them here..
http://findah.ucd.ie/results.php?userid=3669&offset=0&show_names=0&state=6&appid=
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